Transcript: lnc-GAS1-2:1

Basic information

LNCipedia transcript ID: lnc-GAS1-2:1 
LNCipedia gene ID: lnc-GAS1-2
Ensembl Gene ID: ENSG00000269994
Ensembl Transcript ID: ENST00000602579
Location (hg19): chr9:89623370-89657041
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2012 bp
Exons: 2
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000602579.1
Alternative gene names: ENSG00000269994.1; RP11-276H19.2; AL513318.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -23.6574 non-coding 
CPAT coding probability 9.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GAS1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GAS1-2:1
4.0 lnc-GAS1-2:1
4.1 lnc-GAS1-2:1
5.0 lnc-GAS1-2:1
5.1 lnc-SEMA4D-59:2
5.2 lnc-GAS1-2:1