Transcript: lnc-GATA3-4:1

Basic information

LNCipedia transcript ID: lnc-GATA3-4:1 
LNCipedia gene ID: lnc-GATA3-4
Ensembl Gene ID: ENSG00000226861
Ensembl Transcript ID: ENST00000413941
Location (hg19): chr10:8340860-8343630
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 901 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017783; ENST00000413941; ENST00000413941.1; RP5-1119O21.2-001; OTTHUMT00000046729.1; NONHSAT011322
Alternative gene names: XLOC_008383; linc-CELF2-8; ENSG00000226861; RP5-1119O21.2; ENSG00000226861.1; OTTHUMG00000017646.1; AL390835.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -100.9004 non-coding 
CPAT coding probability 2.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GATA3-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GATA3-4:1
3.1 lnc-GATA3-4:1
4.0 lnc-GATA3-4:1
4.1 lnc-GATA3-4:1
5.0 lnc-GATA3-4:1
5.1 lnc-NPY4R2-425:1
5.2 lnc-GATA3-4:1