Transcript: lnc-GATA5-8:1

Basic information

LNCipedia transcript ID: lnc-GATA5-8:1 
LNCipedia gene ID: lnc-GATA5-8
Ensembl Gene ID: ENSG00000167046
Ensembl Transcript ID: ENST00000370520
Location (hg19): chr20:61272071-61274656
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1933 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000370520.3
Alternative gene names: ENSG00000167046.4; RP11-93B14.6; AL357033.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -103.1393 non-coding 
CPAT coding probability 61.02% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-GATA5-8:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-RP11-93B14.6.1-8:1
4.1 lnc-RP11-93B14.6.1-8:1
5.0 lnc-RP11-93B14.6.1-8:1
5.1 lnc-SPATA2-172:1
5.2 lnc-GATA5-8:1