Transcript: lnc-GATA5-9:1

Basic information

LNCipedia transcript ID: lnc-GATA5-9:1 
LNCipedia gene ID: lnc-GATA5-9
Ensembl Gene ID: ENSG00000277496
Ensembl Transcript ID: ENST00000617703
Location (hg19): chr20:61280313-61282119
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1807 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000617703.1
Alternative gene names: ENSG00000277496.1; RP11-93B14.9; AL357033.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 23.2606 non-coding 
CPAT coding probability 47.01% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-GATA5-9:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-RP11-93B14.6.1-9:1
4.1 lnc-RP11-93B14.6.1-9:1
5.0 lnc-RP11-93B14.6.1-9:1
5.1 lnc-SPATA2-173:1
5.2 lnc-GATA5-9:1