Transcript: lnc-GATB-2:6

Basic information

LNCipedia transcript ID: lnc-GATB-2:6 
LNCipedia gene ID: lnc-GATB-2
Ensembl Gene ID: ENSG00000249708
Ensembl Transcript ID: ENST00000515805
Location (hg19): chr4:152808695-152812415
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 406 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007879; ENST00000515805; ENST00000515805.1; RP11-503L23.1-001; OTTHUMT00000365948.1; NONHSAT098771
Alternative gene names: XLOC_004123; linc-PET112L-1; ENSG00000249708; RP11-503L23.1; ENSG00000249708.1; OTTHUMG00000161739.1; AC112242.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -242.2777 non-coding 
CPAT coding probability 0.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GATB-2:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PET112-1:1
3.1 lnc-PET112-1:1
4.0 lnc-PET112-2:6
4.1 lnc-PET112-2:6
5.0 lnc-PET112-2:6
5.1 lnc-TMEM154-13:6
5.2 lnc-GATB-2:6