Transcript: lnc-GBE1-5:1

Basic information

LNCipedia transcript ID: lnc-GBE1-5:1 
LNCipedia gene ID: lnc-GBE1-5
Ensembl Gene ID: ENSG00000242828
Ensembl Transcript ID: ENST00000482003
Location (hg19): chr3:80810193-80838114
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 403 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00005790; ENST00000482003; ENST00000482003.1; RP11-47P18.1-001; OTTHUMT00000352608.1; NONHSAT090592
Alternative gene names: XLOC_003167; linc-ROBO1-3; ENSG00000242828; RP11-47P18.1; ENSG00000242828.1; OTTHUMG00000158943.1; AC068756.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -32.478 non-coding 
CPAT coding probability 0.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GBE1-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GBE1-5:1
3.1 lnc-GBE1-5:1
4.0 lnc-GBE1-5:1
4.1 lnc-GBE1-5:1
5.0 lnc-GBE1-5:1
5.1 lnc-GBE1-5:1
5.2 lnc-GBE1-5:1