Transcript: lnc-GCA-10:1

Basic information

LNCipedia transcript ID: lnc-GCA-10:1 
LNCipedia gene ID: lnc-GCA-10
Location (hg19): chr2:164307189-164309847
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 241 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00003924; NONHSAT075213
Alternative gene names: XLOC_001734; linc-SCN2A-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 22.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GCA-10:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GCA-2:1
3.1 lnc-GCA-4:1
4.0 lnc-GCA-10:1
4.1 lnc-GCA-10:1
5.0 lnc-GCA-10:1
5.1 lnc-TBR1-17:1
5.2 lnc-GCA-10:1