Transcript: lnc-GCLC-1:12

Basic information

LNCipedia transcript ID: lnc-GCLC-1:12 
LNCipedia gene ID: lnc-GCLC-1
Ensembl Gene ID: ENSG00000231683
Ensembl Transcript ID: ENST00000420819
Location (hg19): chr6:53434079-53438063
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 391 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011507; ENST00000420819.2; RP1-27K12.2-001; OTTHUMT00000040961.2; NONHSAT113189
Alternative gene names: XLOC_005747; linc-GCLC; ENSG00000231683.2; RP1-27K12.2; OTTHUMG00000014879.2; ENSG00000231683.6; AL033397.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -90.1338 non-coding 
CPAT coding probability 1.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GCLC-1:12 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KLHL31-1:6
3.1 lnc-KLHL31-1:9
4.0 lnc-GCLC-1:12
4.1 lnc-GCLC-1:12
5.0 lnc-GCLC-1:12
5.1 lnc-GSTA5-13:11
5.2 lnc-GCLC-1:12