Transcript: lnc-GCNT7-6:1

Basic information

LNCipedia transcript ID: lnc-GCNT7-6:1 
LNCipedia gene ID: lnc-GCNT7-6
Location (hg19): chr20:55204350-55204648
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 299 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000055279.1|HBMT00000903521.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -48.1831 non-coding 
CPAT coding probability 5.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GCNT7-6:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-GCNT7-6:1
5.0 lnc-GCNT7-6:1
5.1 lnc-SPATA2-77:1
5.2 lnc-GCNT7-6:1