Transcript: lnc-GDA-1:1

Basic information

LNCipedia transcript ID: lnc-GDA-1:1 
LNCipedia gene ID: lnc-GDA-1
Ensembl Gene ID: ENSG00000235523
Ensembl Transcript ID: ENST00000427901
Location (hg19): chr9:74872252-74872699
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 361 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00015691; ENST00000427901; ENST00000427901.1; RP11-63P12.7-001; OTTHUMT00000052650.1; NONHSAT131853
Alternative gene names: XLOC_007398; linc-TMC1-2; ENSG00000235523; RP11-63P12.7; ENSG00000235523.1; OTTHUMG00000020009.1; AL135924.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -63.8101 non-coding 
CPAT coding probability 2.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GDA-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GDA-1:1
3.1 lnc-GDA-1:1
4.0 lnc-GDA-1:1
4.1 lnc-GDA-1:1
5.0 lnc-GDA-1:1
5.1 lnc-TMC1-4:2
5.2 lnc-GDA-1:1