Transcript: lnc-GDE1-3:8

Basic information

LNCipedia transcript ID: lnc-GDE1-3:8 
LNCipedia gene ID: lnc-GDE1-3
Location (hg19): chr16:19365396-19405054
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 12142 bp
Exons: 5
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000028883.1|MICT00000128222.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 13.2433 non-coding 
CPAT coding probability 8.96% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GDE1-3:8 no no no no

Available literature

  1. Hou (2014), Long noncoding RNAs expression patterns associated with chemo response to cisplatin based chemotherapy in lung squamous cell carcinoma patients., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-GDE1-3:8
5.0 lnc-GDE1-3:8
5.1 lnc-MARF1-53:5
5.2 lnc-GDE1-3:8