Transcript: lnc-GDF11-1:5

Basic information

LNCipedia transcript ID: lnc-GDF11-1:5 
LNCipedia gene ID: lnc-GDF11-1
Ensembl Gene ID: ENSG00000258056
Ensembl Transcript ID: ENST00000552576
Location (hg19): chr12:56122888-56124636
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1443 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000552576.2
Alternative gene names: ENSG00000258056.2; RP11-644F5.11; AC009779.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -82.5304 non-coding 
CPAT coding probability 4.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GDF11-1:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-RDH5-1:5
4.1 lnc-GDF11-1:5
5.0 lnc-GDF11-1:5
5.1 lnc-BLOC1S1-1:4
5.2 lnc-GDF11-1:5