Transcript: lnc-GDF5-1:2

Basic information

LNCipedia transcript ID: lnc-GDF5-1:2 
LNCipedia gene ID: lnc-GDF5-1
Ensembl Gene ID: ENSG00000230155
Ensembl Transcript ID: ENST00000416260
Location (hg19): chr20:34064199-34078745
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 486 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000416260.1; RP3-477O4.14-001; OTTHUMT00000125988.1; NONHSAT079502
Alternative gene names: ENSG00000230155.1; RP3-477O4.14; OTTHUMG00000055986.3; ENSG00000230155.2; ENSG00000230155.6; FO393401.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -208.7302 non-coding 
CPAT coding probability 2.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GDF5-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GDF5-1:2
4.0 lnc-GDF5-1:2
4.1 lnc-GDF5-1:2
5.0 lnc-GDF5-1:2
5.1 lnc-EIF6-6:2
5.2 lnc-GDF5-1:2