Transcript: lnc-GFM1-6:1

Basic information

LNCipedia transcript ID: lnc-GFM1-6:1 
LNCipedia gene ID: lnc-GFM1-6
Ensembl Gene ID: ENSG00000240207
Ensembl Transcript ID: ENST00000477589
Location (hg19): chr3:158458206-158461381
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1087 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000477589.1; RP11-379F4.4-001; OTTHUMT00000352354.1; NONHSAT092940; ENST00000477589.5
Alternative gene names: ENSG00000240207.1; RP11-379F4.4; OTTHUMG00000158833.1; ENSG00000240207.2; ENSG00000240207.6; AC080013.1

RNA sequence:


Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -159.6264 non-coding 
CPAT coding probability 3.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GFM1-6:1 yes no no no

Available literature

  1. Zhou (2015), A potential signature of eight long non-coding RNAs predicts survival in patients with non-small cell lung cancer., J Transl Med

LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GFM1-1:3
4.0 lnc-GFM1-1:3
4.1 lnc-MFSD1-4:18
5.0 lnc-MFSD1-4:18
5.1 lnc-IQCJ-SCHIP1-21:1
5.2 lnc-GFM1-6:1