Transcript: lnc-GFM1-7:1

Basic information

LNCipedia transcript ID: lnc-GFM1-7:1 
LNCipedia gene ID: lnc-GFM1-7
Location (hg19): chr3:158477958-158488923
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 549 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT092942
Alternative gene names:

RNA sequence:


Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -7.7208 non-coding 
CPAT coding probability 2.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GFM1-7:1 yes no no no

Available literature

  1. Zhou (2015), A potential signature of eight long non-coding RNAs predicts survival in patients with non-small cell lung cancer., J Transl Med

LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GFM1-1:7
4.0 lnc-GFM1-1:7
4.1 lnc-MFSD1-4:20
5.0 lnc-MFSD1-4:20
5.1 lnc-IQCJ-SCHIP1-13:20
5.2 lnc-GFM1-7:1