Transcript: lnc-GGPS1-2:1

Basic information

LNCipedia transcript ID: lnc-GGPS1-2:1 
LNCipedia gene ID: lnc-GGPS1-2
Ensembl Gene ID: ENSG00000237520
Ensembl Transcript ID: ENST00000423963
Location (hg19): chr1:235092978-235095736
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 423 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000425; ENST00000423963; ENST00000423963.1; RP11-443B7.2-001; OTTHUMT00000092803.1; NONHSAT010320
Alternative gene names: XLOC_000627; linc-GGPS1-1; ENSG00000237520; RP11-443B7.2; ENSG00000237520.1; OTTHUMG00000038015.1; AL391832.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -636.3899 non-coding 
CPAT coding probability 7.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GGPS1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GGPS1-1:1
3.1 lnc-GGPS1-2:1
4.0 lnc-GGPS1-2:1
4.1 lnc-GGPS1-2:1
5.0 lnc-GGPS1-2:1
5.1 lnc-KCNK1-31:1
5.2 lnc-GGPS1-2:1