Transcript: lnc-GGT1-16:2

Basic information

LNCipedia transcript ID: lnc-GGT1-16:2 
LNCipedia gene ID: lnc-GGT1-16
Ensembl Gene ID: ENSG00000215481
Ensembl Transcript ID: ENST00000621462
Location (hg19): chr22:25028921-25045979
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1021 bp
Exons: 6
Sources: Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000621462.4
Alternative gene names: ENSG00000215481.9; BCRP3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 120.3464 coding 
CPAT coding probability 96.83% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-GGT1-16:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-CABIN1-16:2
5.1 lnc-CABIN1-16:2
5.2 lnc-GGT1-16:2