Transcript: lnc-GGT2-1:1

Basic information

LNCipedia transcript ID: lnc-GGT2-1:1 
LNCipedia gene ID: lnc-GGT2-1
Ensembl Gene ID: ENSG00000234503
Ensembl Transcript ID: ENST00000417463
Location (hg19): chr22:21532181-21534164
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 774 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000417463; ENST00000417463.1; KB-1592A4.14-001; OTTHUMT00000320106.1; NONHSAT083645
Alternative gene names: ENSG00000234503; KB-1592A4.14; ENSG00000234503.1; OTTHUMG00000150794.1; AP000550.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -12.9364 non-coding 
CPAT coding probability 5.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GGT2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GGT2-1:1
3.1 lnc-GGT2-1:1
4.0 lnc-GGT2-1:1
4.1 lnc-GGT2-1:1
5.0 lnc-GGT2-1:1
5.1 lnc-SCARF2-24:1
5.2 lnc-GGT2-1:1