Transcript: lnc-GGTLC1-3:1

Basic information

LNCipedia transcript ID: lnc-GGTLC1-3:1 
LNCipedia gene ID: lnc-GGTLC1-3
Ensembl Gene ID: ENSG00000236151
Ensembl Transcript ID: ENST00000457224
Location (hg19): chr20:24123226-24125022
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 534 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00028026; ENST00000457224; ENST00000457224.1; RP5-1100I6.1-001; OTTHUMT00000078369.1; NONHSAT079101
Alternative gene names: XLOC_013698; linc-GGTLC1-4; ENSG00000236151; RP5-1100I6.1; ENSG00000236151.1; OTTHUMG00000032097.1; AL110503.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -59.3094 non-coding 
CPAT coding probability 0.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GGTLC1-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GGTLC1-3:1
3.1 lnc-GGTLC1-3:1
4.0 lnc-GGTLC1-3:1
4.1 lnc-GGTLC1-3:1
5.0 lnc-GGTLC1-3:1
5.1 lnc-CST4-16:1
5.2 lnc-GGTLC1-3:1