Transcript: lnc-GGTLC2-10:3

Basic information

LNCipedia transcript ID: lnc-GGTLC2-10:3 
LNCipedia gene ID: lnc-GGTLC2-10
Ensembl Gene ID: ENSG00000220891
Ensembl Transcript ID: ENST00000407120
Location (hg19): chr22:22901750-22909007
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3111 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000407120.1
Alternative gene names: ENSG00000220891.1; LL22NC03-63E9.3; AC246793.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -18.1995 non-coding 
CPAT coding probability 6.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GGTLC2-10:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-LL22NC03-63E9.3.1-10:2
4.1 lnc-LL22NC03-63E9.3.1-10:2
5.0 lnc-LL22NC03-63E9.3.1-10:2
5.1 lnc-SLC2A11-49:2
5.2 lnc-GGTLC2-10:3