Transcript: lnc-GINM1-1:1

Basic information

LNCipedia transcript ID: lnc-GINM1-1:1 
LNCipedia gene ID: lnc-GINM1-1
Ensembl Gene ID: ENSG00000235168
Ensembl Transcript ID: ENST00000446392
Location (hg19): chr6:149882288-149885085
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 378 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011398; ENST00000446392; ENST00000446392.1; RP1-12G14.5-001; OTTHUMT00000042647.1; NONHSAT115502
Alternative gene names: XLOC_005498; linc-C6orf72; ENSG00000235168; RP1-12G14.5; ENSG00000235168.1; OTTHUMG00000015791.1; AL078581.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -217.7892 non-coding 
CPAT coding probability 1.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GINM1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C6orf72-1:1
3.1 lnc-C6orf72-1:1
4.0 lnc-C6orf72-1:1
4.1 lnc-C6orf72-1:1
5.0 lnc-C6orf72-1:1
5.1 lnc-ULBP2-11:1
5.2 lnc-GINM1-1:1