Transcript: lnc-GINS1-12:3

Basic information

LNCipedia transcript ID: lnc-GINS1-12:3 
LNCipedia gene ID: lnc-GINS1-12
Location (hg19): chr20:26171625-26174582
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 626 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: TCONS_00027921; ENST00000416638; ENST00000416638.1; RP3-410C9.2-001; OTTHUMT00000078485.1; NONHSAT079255
Alternative gene names: XLOC_013504; linc-DEFB115-1; ENSG00000238129; RP3-410C9.2; ENSG00000238129.1; OTTHUMG00000032150.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1.4503 non-coding 
CPAT coding probability 0.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GINS1-12:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM182A-2:1
3.1 lnc-FAM182A-2:1
4.0 lnc-FAM182A-2:1
4.1 lnc-FAM182A-2:1
5.0 lnc-FAM182A-2:1
5.1 lnc-CST8-50:3
5.2 lnc-GINS1-12:3