Transcript: lnc-GINS1-3:2

Basic information

LNCipedia transcript ID: lnc-GINS1-3:2 
LNCipedia gene ID: lnc-GINS1-3
Location (hg19): chr20:25844905-25848315
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1693 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000424021; ENST00000424021.1; RP13-401N8.4-001; OTTHUMT00000078467.1; NONHSAT079198
Alternative gene names: ENSG00000238157; RP13-401N8.4; ENSG00000238157.1; OTTHUMG00000032138.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 58.6201 non-coding 
CPAT coding probability 37.22% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-GINS1-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM182A-3:1
3.1 lnc-FAM182A-3:1
4.0 lnc-FAM182A-3:1
4.1 lnc-FAM182A-3:1
5.0 lnc-FAM182A-3:1
5.1 lnc-CST8-47:1
5.2 lnc-GINS1-3:2