Transcript: lnc-GINS1-9:1

Basic information

LNCipedia transcript ID: lnc-GINS1-9:1 
LNCipedia gene ID: lnc-GINS1-9
Ensembl Gene ID: ENSG00000278383
Ensembl Transcript ID: ENST00000611460
Location (hg19): chr20:25661417-25661882
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 466 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000611460.1
Alternative gene names: ENSG00000278383.1; RP4-694B14.8; ; AL031673.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -1.7636 non-coding 
CPAT coding probability 1.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GINS1-9:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-GINS1-8:1
4.1 ZNF337-AS1:23
5.0 ZNF337-AS1:23
5.1 lnc-CST8-52:1
5.2 lnc-GINS1-9:1