Transcript: lnc-GJA1-2:1

Basic information

LNCipedia transcript ID: lnc-GJA1-2:1 
LNCipedia gene ID: lnc-GJA1-2
Location (hg19): chr6:122007930-122017769
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 313 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00011941; NONHSAT114743
Alternative gene names: XLOC_005451; linc-HSF2-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -494.0591 non-coding 
CPAT coding probability 0.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GJA1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GJA1-2:1
3.1 lnc-GJA1-2:1
4.0 lnc-GJA1-2:1
4.1 lnc-GJA1-2:1
5.0 lnc-GJA1-2:1
5.1 lnc-TPD52L1-26:1
5.2 lnc-GJA1-2:1