Transcript: lnc-GMDS-6:22

Basic information

LNCipedia transcript ID: lnc-GMDS-6:22 
LNCipedia gene ID: lnc-GMDS-6
Location (hg19): chr6:1527533-1555433
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2064 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000087118.1|MICT00000295776.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -110.2087 non-coding 
CPAT coding probability 0.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GMDS-6:22 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-GMDS-6:22
5.0 lnc-GMDS-6:22
5.1 lnc-ECI2-160:20
5.2 lnc-GMDS-6:22