Transcript: lnc-GNAT3-1:10

Basic information

LNCipedia transcript ID: lnc-GNAT3-1:10 
LNCipedia gene ID: lnc-GNAT3-1
Ensembl Gene ID: ENSG00000232667
Ensembl Transcript ID: ENST00000629436
Location (hg19): chr7:80009611-80020771
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 629 bp
Exons: 5
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000629436.1
Alternative gene names: ENSG00000232667.9; AC004862.6; ENSG00000232667.10; AC004862.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -103.1983 non-coding 
CPAT coding probability 0.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GNAT3-1:10 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-GNAT3-1:10
4.1 lnc-GNAT3-1:10
5.0 lnc-GNAT3-1:10
5.1 lnc-SEMA3C-5:2
5.2 lnc-GNAT3-1:10