Transcript: lnc-GNG5-1:9

Basic information

LNCipedia transcript ID: lnc-GNG5-1:9 
LNCipedia gene ID: lnc-GNG5-1
Location (hg19): chr1:84830648-84863576
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1544 bp
Exons: 9
Sources: Broad Institute
Alternative transcript names: TCONS_00000018
Alternative gene names: XLOC_000892; linc-TTLL7-7


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 660.1779 coding 
CPAT coding probability 25.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-GNG5-1:9 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GNG5-3:1
3.1 lnc-GNG5-3:1
4.0 lnc-GNG5-3:1
4.1 lnc-GNG5-1:9
5.0 lnc-GNG5-1:9
5.1 lnc-RBMXL1-52:9
5.2 lnc-GNG5-1:9