Transcript: lnc-GNGT2-1:2

Basic information

LNCipedia transcript ID: lnc-GNGT2-1:2 
LNCipedia gene ID: lnc-GNGT2-1
Location (hg19): chr17:47269033-47270257
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1225 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000033898.1|FTMT26600002571.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -54.8334 non-coding 
CPAT coding probability 5.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GNGT2-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-GNGT2-1:2
5.0 lnc-GNGT2-1:2
5.1 lnc-ZNF652-5:2
5.2 lnc-GNGT2-1:2