Transcript: lnc-GNS-2:1

Basic information

LNCipedia transcript ID: lnc-GNS-2:1 
LNCipedia gene ID: lnc-GNS-2
Ensembl Gene ID: ENSG00000256670
Ensembl Transcript ID: ENST00000546135
Location (hg19): chr12:64992858-65003239
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 254 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000546135.1; RP11-338E21.1-001; OTTHUMT00000401158.1; NONHSAT029154
Alternative gene names: ENSG00000256670.1; RP11-338E21.1; OTTHUMG00000168811.1; AC078962.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -301.134 non-coding 
CPAT coding probability 1.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GNS-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GNS-2:1
4.0 lnc-GNS-2:1
4.1 lnc-GNS-2:1
5.0 lnc-GNS-2:1
5.1 lnc-C12orf56-2:6
5.2 lnc-GNS-2:1