Transcript: lnc-GOLGA6A-1:1

Basic information

LNCipedia transcript ID: lnc-GOLGA6A-1:1 
LNCipedia gene ID: lnc-GOLGA6A-1
Ensembl Gene ID: ENSG00000248540
Ensembl Transcript ID: ENST00000514871
RefSeq ID: NR_027073
Location (hg19): chr15:74418714-74421619
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2566 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000514871; NR_027073; ENST00000514871.1; NR_027073.1
Alternative gene names: ENSG00000248540; AC010931.2; ENSG00000248540.2; RP11-247C2.2; LOC283731


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -93.405 non-coding 
CPAT coding probability 14.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GOLGA6A-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-247C2.2.1-1:1
3.1 lnc-RP11-247C2.2.1-1:1
4.0 lnc-RP11-247C2.2.1-1:1
4.1 lnc-RP11-247C2.2.1-1:1
5.0 lnc-RP11-247C2.2.1-1:1
5.1 lnc-PKM-51:1
5.2 lnc-GOLGA6A-1:1