Transcript: lnc-GPATCH2L-1:4

Basic information

LNCipedia transcript ID: lnc-GPATCH2L-1:4 
LNCipedia gene ID: lnc-GPATCH2L-1
Location (hg19): chr14:76702195-76705490
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 289 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00022557; NONHSAT037902
Alternative gene names: XLOC_010878; linc-ESRRB-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -536.3223 non-coding 
CPAT coding probability 0.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GPATCH2L-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ESRRB-1:1
3.1 lnc-C14orf118-1:2
4.0 lnc-C14orf118-1:2
4.1 lnc-C14orf118-1:2
5.0 lnc-C14orf118-1:2
5.1 lnc-BATF-17:5
5.2 lnc-GPATCH2L-1:4