Transcript: lnc-GPATCH4-1:7

Basic information

LNCipedia transcript ID: lnc-GPATCH4-1:7 
LNCipedia gene ID: lnc-GPATCH4-1
Location (hg19): chr1:156567732-156571262
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 653 bp
Exons: 4
Sources: NONCODE v4
Alternative transcript names: NONHSAT006897
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score 912.7183 coding 
CPAT coding probability 63.26% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-GPATCH4-1:7 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-IQGAP3-1:5
4.0 lnc-GPATCH4-1:7
4.1 lnc-GPATCH4-1:7
5.0 lnc-GPATCH4-1:7
5.1 lnc-PAQR6-14:5
5.2 lnc-GPATCH4-1:7