Transcript: lnc-GPBP1-3:5

Basic information

LNCipedia transcript ID: lnc-GPBP1-3:5 
LNCipedia gene ID: lnc-GPBP1-3
RefSeq ID: NR_104668
Location (hg19): chr5:56946487-56966816
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1662 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_104668; NR_104668.1
Alternative gene names: LOC101928505


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -19.1428 non-coding 
CPAT coding probability 3.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GPBP1-3:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GPBP1-3:5
4.0 lnc-GPBP1-3:5
4.1 lnc-GPBP1-3:5
5.0 lnc-GPBP1-3:5
5.1 lnc-GPBP1-16:7
5.2 lnc-GPBP1-3:5