Transcript: lnc-GPBP1L1-3:4

Basic information

LNCipedia transcript ID: lnc-GPBP1L1-3:4 
LNCipedia gene ID: lnc-GPBP1L1-3
Ensembl Gene ID: ENSG00000230896
Ensembl Transcript ID: ENST00000430643
Location (hg19): chr1:46160356-46162747
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 598 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000430643.1; RP11-767N6.7-001; OTTHUMT00000192833.1; NONHSAT002966
Alternative gene names: ENSG00000230896.1; RP11-767N6.7; OTTHUMG00000085067.1; AL604028.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -47.3422 non-coding 
CPAT coding probability 0.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GPBP1L1-3:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GPBP1L1-1:1
4.0 lnc-GPBP1L1-3:4
4.1 lnc-GPBP1L1-3:4
5.0 lnc-GPBP1L1-3:4
5.1 lnc-GPBP1L1-3:4
5.2 lnc-GPBP1L1-3:4