Transcript: lnc-GPC1-4:4

Basic information

LNCipedia transcript ID: lnc-GPC1-4:4 
LNCipedia gene ID: lnc-GPC1-4
Location (hg19): chr2:240964894-240973828
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3088 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000047306.1|MICT00000211048.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -3.4907 non-coding 
CPAT coding probability 2.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GPC1-4:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-AC093802.1.1-4:4
5.0 lnc-AC093802.1.1-4:4
5.1 lnc-SNED1-21:4
5.2 lnc-GPC1-4:4