Transcript: lnc-GPCPD1-8:11

Basic information

LNCipedia transcript ID: lnc-GPCPD1-8:11 
HGNC Gene Symbol: lnc-GPCPD1-8    
HGNC Full Gene Name: long intergenic non-protein coding RNA 654
Ensembl Gene ID: ENSG00000205181
Ensembl Transcript ID: ENST00000379053
Location (hg19): chr20:5476713-5485259
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 6113 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT078363; ENST00000379053.4
Alternative gene names: ENSG00000205181.5; LINC00654;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -16.8378 non-coding 
CPAT coding probability 8.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GPCPD1-8:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GPCPD1-1:16
4.0 LINC00654:11
4.1 LINC00654:11
5.0 LINC00654:11
5.1 lnc-RNF24-46:11
5.2 lnc-GPCPD1-8:11