Transcript: lnc-GPCPD1-8:21

Basic information

LNCipedia transcript ID: lnc-GPCPD1-8:21 
LNCipedia gene ID: lnc-GPCPD1-8
Location (hg19): chr20:5482168-5483436
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 470 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00027994; ENST00000430333; ENST00000430333.1; RP5-1022P6.6-002; OTTHUMT00000077879.1; NONHSAT078491
Alternative gene names: XLOC_013643; linc-PROKR2-4; ENSG00000205181; RP5-1022P6.6; ENSG00000205181.2; OTTHUMG00000031810.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -63.0937 non-coding 
CPAT coding probability 45.21% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-GPCPD1-8:21 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GPCPD1-1:11
3.1 lnc-GPCPD1-1:11
4.0 LINC00654:16
4.1 LINC00654:16
5.0 LINC00654:16
5.1 lnc-RNF24-46:21
5.2 lnc-GPCPD1-8:21