Transcript: lnc-GPD2-2:7

Basic information

LNCipedia transcript ID: lnc-GPD2-2:7 
LNCipedia gene ID: lnc-GPD2-2
Location (hg19): chr2:157890362-157906713
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1499 bp
Exons: 5
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00003915; NONHSAT075061
Alternative gene names: XLOC_001719; linc-GALNT5-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -77.4413 non-coding 
CPAT coding probability 1.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GPD2-2:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GALNT5-1:1
3.1 lnc-GALNT5-1:1
4.0 lnc-GALNT5-1:1
4.1 lnc-GPD2-2:7
5.0 lnc-GPD2-2:7
5.1 lnc-UPP2-11:7
5.2 lnc-GPD2-2:7