Transcript: lnc-GPR183-47:13

Basic information

LNCipedia transcript ID: lnc-GPR183-47:13 
LNCipedia gene ID: lnc-GPR183-47
RefSeq ID: NR_133664
Location (hg19): chr13:100151977-100153317
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 887 bp
Exons: 2
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_133664.1
Alternative gene names: LINC00449


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 18.2454 non-coding 
CPAT coding probability 8.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GPR183-47:13 yes no no no

Available literature

  1. Tong (2015), Identification of the long non-coding RNA POU3F3 in plasma as a novel biomarker for diagnosis of esophageal squamous cell carcinoma., Mol. Cancer
  2. Li (2014), LncRNA profile study reveals a three-lncRNA signature associated with the survival of patients with oesophageal squamous cell carcinoma., Gut


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-IRS2-47:13
5.1 lnc-IRS2-47:13
5.2 lnc-GPR183-47:13