Transcript: lnc-GPR183-47:25

Basic information

LNCipedia transcript ID: lnc-GPR183-47:25 
LNCipedia gene ID: lnc-GPR183-47
Location (hg19): chr13:100143537-100144751
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 335 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000435885.1; RP11-214F16.3-001; OTTHUMT00000045601.1; NONHSAT034920
Alternative gene names: ENSG00000225985.1; RP11-214F16.3; OTTHUMG00000017271.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.8782 non-coding 
CPAT coding probability 4.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GPR183-47:25 yes no no no

Available literature

  1. Tong (2015), Identification of the long non-coding RNA POU3F3 in plasma as a novel biomarker for diagnosis of esophageal squamous cell carcinoma., Mol. Cancer
  2. Li (2014), LncRNA profile study reveals a three-lncRNA signature associated with the survival of patients with oesophageal squamous cell carcinoma., Gut


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GPR183-1:1
4.0 LINC00449:11
4.1 LINC00449:11
5.0 LINC00449:11
5.1 lnc-IRS2-47:25
5.2 lnc-GPR183-47:25