Transcript: lnc-GPR31-1:2

Basic information

LNCipedia transcript ID: lnc-GPR31-1:2 
LNCipedia gene ID: lnc-GPR31-1
Ensembl Gene ID: ENSG00000231720
Ensembl Transcript ID: ENST00000454185
Location (hg19): chr6:167650996-167653968
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 579 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011614; ENST00000454185; ENST00000454185.1; RP11-568A7.3-001; OTTHUMT00000043124.1; NONHSAT116091
Alternative gene names: XLOC_005921; linc-GPR31-2; ENSG00000231720; RP11-568A7.3; ENSG00000231720.1; OTTHUMG00000016020.1; AL353747.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -30.458 non-coding 
CPAT coding probability 20.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GPR31-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GPR31-1:2
3.1 lnc-GPR31-1:2
4.0 lnc-GPR31-1:2
4.1 lnc-GPR31-1:2
5.0 lnc-GPR31-1:2
5.1 lnc-PRKN-57:2
5.2 lnc-GPR31-1:2