Transcript: lnc-GPR33-6:1

Basic information

LNCipedia transcript ID: lnc-GPR33-6:1 
LNCipedia gene ID: lnc-GPR33-6
Ensembl Gene ID: ENSG00000258580
Ensembl Transcript ID: ENST00000556520
Location (hg19): chr14:32872250-32887180
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 518 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000556520.1; RP11-320M16.2-002; OTTHUMT00000409759.1; NONHSAT036305
Alternative gene names: ENSG00000258580.1; RP11-320M16.2; OTTHUMG00000170592.1; AL136298.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -130.2822 non-coding 
CPAT coding probability 0.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GPR33-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C14orf126-6:1
4.0 lnc-C14orf126-6:1
4.1 lnc-C14orf126-6:1
5.0 lnc-C14orf126-6:1
5.1 lnc-EFS-118:1
5.2 lnc-GPR33-6:1