Transcript: lnc-GPR50-1:1

Basic information

LNCipedia transcript ID: lnc-GPR50-1:1 
LNCipedia gene ID: lnc-GPR50-1
Ensembl Gene ID: ENSG00000269993
Ensembl Transcript ID: ENST00000602313
Location (hg19): chrX:150350858-150351327
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 470 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT139006; ENST00000602313.1
Alternative gene names: ENSG00000269993.1; AF003625.3; KC877982.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -123.7599 non-coding 
CPAT coding probability 5.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GPR50-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GPR50-1:1
4.0 lnc-GPR50-1:1
4.1 lnc-GPR50-1:1
5.0 lnc-GPR50-1:1
5.1 lnc-MAGEA11-14:1
5.2 lnc-GPR50-1:1