Transcript: lnc-GPRIN2-1:3

Basic information

LNCipedia transcript ID: lnc-GPRIN2-1:3 
LNCipedia gene ID: lnc-GPRIN2-1
Ensembl Gene ID: ENSG00000231187
Ensembl Transcript ID: ENST00000430188
Location (hg19): chr10:46951553-46953608
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 553 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000430188.1; RP11-38L15.3-001; OTTHUMT00000047835.2; NONHSAT013144
Alternative gene names: ENSG00000231187.2; RP11-38L15.3; OTTHUMG00000018106.2; AL356056.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -111.8326 non-coding 
CPAT coding probability 16.41% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GPRIN2-1:3 no no no no

Available literature

  1. Wang (2015), Genome-wide differential expression of synaptic long noncoding RNAs in autism spectrum disorder., Transl Psychiatry


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM35B-1:2
4.0 lnc-FAM35B-1:2
4.1 lnc-FAM35B-1:2
5.0 lnc-FAM35B-1:2
5.1 lnc-LRRC18-46:2
5.2 lnc-GPRIN2-1:3