Transcript: lnc-GPS2-2:1

Basic information

LNCipedia transcript ID: lnc-GPS2-2:1 
LNCipedia gene ID: lnc-GPS2-2
Location (hg19): chr17:7225049-7230158
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1850 bp
Exons: 15
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000573651.1; RP11-542C16.2-005; OTTHUMT00000440667.1
Alternative gene names: ENSG00000261915.1; RP11-542C16.2; OTTHUMG00000178134.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 3643.214 coding 
CPAT coding probability 100.00% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-GPS2-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GPS2-2:1
4.0 lnc-GPS2-2:1
4.1 lnc-GPS2-2:1
5.0 lnc-GPS2-2:1
5.1 lnc-YBX2-3:1
5.2 lnc-GPS2-2:1