Transcript: lnc-GPT2-13:1

Basic information

LNCipedia transcript ID: lnc-GPT2-13:1 
LNCipedia gene ID: lnc-GPT2-13
Location (hg19): chr16:47177999-47217006
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1004 bp
Exons: 5
Sources: NONCODE v4
Alternative transcript names: NONHSAT142282
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -3.8343 non-coding 
CPAT coding probability 0.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GPT2-13:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GPT2-3:4
4.0 ITFG1-AS1:4
4.1 ITFG1-AS1:4
5.0 ITFG1-AS1:4
5.1 lnc-ADGRG1-199:1
5.2 lnc-GPT2-13:1