Transcript: lnc-GPT2-13:2

Basic information

LNCipedia transcript ID: lnc-GPT2-13:2 
LNCipedia gene ID: lnc-GPT2-13
Location (hg19): chr16:47178000-47216891
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 723 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000260281.1|HBMT00000543036.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -3.8343 non-coding 
CPAT coding probability 0.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GPT2-13:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 ITFG1-AS1:12
5.0 ITFG1-AS1:12
5.1 lnc-ADGRG1-199:2
5.2 lnc-GPT2-13:2