Transcript: lnc-GRAMD2B-16:1

Basic information

LNCipedia transcript ID: lnc-GRAMD2B-16:1 
LNCipedia gene ID: lnc-GRAMD2B-16
Location (hg19): chr5:124712527-124713132
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 606 bp
Exons: 1
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Hangauer et al., 2013; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000511631; ENST00000511631.1; RP11-395P13.4-001; OTTHUMT00000371323.1; NONHSAT103557; FPKM1_group_26253_transcript_1
Alternative gene names: ENSG00000250402; RP11-395P13.4; ENSG00000250402.1; OTTHUMG00000163006.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -140.0108 non-coding 
CPAT coding probability 1.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GRAMD2B-16:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-43D2.2.1-11:1
3.1 lnc-RP11-43D2.2.1-16:1
4.0 lnc-RP11-43D2.2.1-16:1
4.1 lnc-RP11-43D2.2.1-16:1
5.0 lnc-RP11-43D2.2.1-16:1
5.1 lnc-PDLIM4-121:1
5.2 lnc-GRAMD2B-16:1