Transcript: lnc-GRAP-7:1

Basic information

LNCipedia transcript ID: lnc-GRAP-7:1 
LNCipedia gene ID: lnc-GRAP-7
Location (hg19): chr17:19092978-19093558
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 581 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000580533.1; SNORD3C-001; OTTHUMT00000442028.1; NONHSAT146442
Alternative gene names: ENSG00000264940.1; SNORD3C; OTTHUMG00000178446.1; ENSG00000264940.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 17.7929 non-coding 
CPAT coding probability 4.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GRAP-7:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC007952.2.1-1:1
4.0 lnc-AC007952.2.1-2:1
4.1 lnc-AC007952.2.1-2:1
5.0 lnc-AC007952.2.1-2:1
5.1 lnc-B9D1-8:1
5.2 lnc-GRAP-7:1